ALBERGA, DOMENICO
ALBERGA, DOMENICO
A New Approach for Drug Target and Bioactivity Prediction: The Multifingerprint Similarity Search Algorithm (MuSSeL)
2019-01-01 Alberga, Domenico; Trisciuzzi, Daniela; Montaruli, Michele; Leonetti, Francesco; Mangiatordi, Giuseppe Felice; Nicolotti, Orazio
A rational approach to elucidate human monoamine oxidase molecular selectivity
2017-01-01 Mangiatordi, Giuseppe Felice; Alberga, Domenico; Pisani, Leonardo; Gadaleta, Domenico; Trisciuzzi, Daniela; Farina, Roberta; Carotti, A; Lattanzi, G; Catto, Marco; Nicolotti, Orazio
Accelerating drug discovery by early protein drug target prediction based on a multi-fingerprint similarity search †
2019-01-01 Montaruli, M.; Alberga, D.; Ciriaco, F.; Trisciuzzi, D.; Tondo, A. R.; Mangiatordi, G. F.; Nicolotti, O.
ALPACA: A machine Learning Platform for Affinity and selectivity profiling of CAnnabinoids receptors modulators
2023-01-01 Delre, Pietro; Contino, Marialessandra; Alberga, Domenico; Saviano, Michele; Corriero, Nicola; Mangiatordi, Giuseppe Felice
AMALPHI: A Machine Learning Platform for Predicting Drug-Induced PhospholIpidosis
2023-01-01 Lomuscio, Maria Cristina; Abate, Carmen; Alberga, Domenico; Laghezza, Antonio; Corriero, Nicola; Colabufo, Nicola Antonio; Saviano, Michele; Delre, Pietro; Mangiatordi, Giuseppe Felice
Automated identification of structurally heterogeneous and patentable antiproliferative hits as potential tubulin inhibitors
2018-01-01 Mangiatordi, G. F.; Trisciuzzi, D.; Iacobazzi, R.; Denora, N.; Pisani, L.; Catto, M.; Leonetti, F.; Alberga, D.; Nicolotti, O.
CATMoS: Collaborative Acute Toxicity Modeling Suite
2021-01-01 Mansouri, K; Karmaus, Al; Fitzpatrick, J; Patlewicz, G; Pradeep, P; Alberga, D; Alepee, N; Allen, Teh; Allen, D; Alves, Vm; Andrade, Ch; Auernhammer, Tr; Ballabio, D; Bell, S; Benfenati, E; Bhattacharya, S; Bastos, Jv; Boyd, S; Brown, Jb; Capuzzi, Sj; Chushak, Y; Ciallella, H; Clark, Am; Consonni, V; Daga, Pr; Ekins, S; Farag, S; Fedorov, M; Fourches, D; Gadaleta, D; Gao, F; Gearhart, Jm; Goh, G; Goodman, Jm; Grisoni, F; Grulke, Cm; Hartung, T; Hirn, M; Karpov, P; Korotcov, A; Lavado, Gj; Lawless, M; Li, Xh; Luechtefeld, T; Lunghini, F; Mangiatordi, Gf; Marcou, G; Marsh, D; Martin, T; Mauri, A; Muratov, En; Myatt, Gj; Nguyen, Dt; Nicolotti, O; Note, R; Pande, P; Parks, Ak; Peryea, T; Polash, Ah; Rallo, R; Roncaglioni, A; Rowlands, C; Ruiz, P; Russo, Dp; Sayed, A; Sayre, R; Sheils, T; Siegel, C; Silva, Ac; Simeonov, A; Sosnin, S; Southall, N; Strickland, J; Tang, Y; Teppen, B; Tetko, Iv; Thomas, D; Tkachenko, V; Todeschini, R; Toma, C; Tripodi, I; Trisciuzzi, D; Tropsha, A; Varnek, A; Vukovic, K; Wang, Zy; Wang, Lg; Waters, Km; Wedlake, Aj; Wijeyesakere, Sj; Wilson, D; Xiao, Zj; Yang, Hb; Zahoranszky-Kohalmi, G; Zakharov, Av; Zhang, Ff; Zhang, Z; Zhao, Tg; Zhu, H; Zorn, Km; Casey, W; Kleinstreuer, Nc
Challenging AQP4 druggability for NMO-IgG antibody binding using molecular dynamics and molecular interaction fields
2015-01-01 Mangiatordi, Giuseppe Felice; Alberga, Domenico; Siragusa, Lydia; Goracci, Laura; Lattanzi, Gianluca; Nicolotti, Orazio
ClC-1 mutations in myotonia congenita patients: insights into molecular gating mechanisms and genotype-phenotype correlation
2015-01-01 Imbrici, P; Maggi, L; Mangiatordi, G F; Dinardo, M M; Altamura, Concetta; Brugnoni, R; Alberga, D; Pinter, G L; Ricci, G; Siciliano, G; Micheli, R; Annicchiarico, G; Lattanzi, G; Nicolotti, O; Morandi, L; Bernasconi, P; Desaphy, J-F; Mantegazza, R; Camerino, D C
Compara: Collaborative modeling project for androgen receptor activity
2020-01-01 Mansouri, K.; Kleinstreuer, N.; Abdelaziz, A. M.; Alberga, D.; Alves, V. M.; Andersson, P. L.; Andrade, C. H.; Bai, F.; Balabin, I.; Ballabio, D.; Benfenati, E.; Bhhatarai, B.; Boyer, S.; Chen, J.; Consonni, V.; Farag, S.; Fourches, D.; Garcia-Sosa, A. T.; Gramatica, P.; Grisoni, F.; Grulke, C. M.; Hong, H.; Horvath, D.; Hu, X.; Huang, R.; Jeliazkova, N.; Li, J.; Li, X.; Liu, H.; Manganelli, S.; Mangiatordi, G. F.; Maran, U.; Marcou, G.; Martin, T.; Muratov, E.; Nguyen, D. -T.; Nicolotti, O.; Nikolov, N. G.; Norinder, U.; Papa, E.; Petitjean, M.; Piir, G.; Pogodin, P.; Poroikov, V.; Qiao, X.; Richard, A. M.; Roncaglioni, A.; Ruiz, P.; Rupakheti, C.; Sakkiah, S.; Sangion, A.; Schramm, K. -W.; Selvaraj, C.; Shah, I.; Sild, S.; Sun, L.; Taboureau, O.; Tang, Y.; Tetko, I. V.; Todeschini, R.; Tong, W.; Trisciuzzi, D.; Tropsha, A.; Van Den Driessche, G.; Varnek, A.; Wang, Z.; Wedebye, E. B.; Williams, A. J.; Xie, H.; Zakharov, A. V.; Zheng, Z.; Judson, R. S.
De Novo Drug Design of Targeted Chemical Libraries Based on Artificial Intelligence and Pair-Based Multiobjective Optimization
2020-01-01 Alberga, Domenico; Gambacorta, Nicola; Trisciuzzi, Daniela; Ciriaco, Fulvio; Amoroso, Nicola; Nicolotti, Orazio
DeLA-DrugSelf: Empowering multi-objective de novo design through SELFIES molecular representation
2024-01-01 Alberga, D.; Lamanna, G.; Graziano, G.; Delre, P.; Lomuscio, M. C.; Corriero, N.; Ligresti, A.; Siliqi, D.; Saviano, M.; Contino, M.; Stefanachi, A.; Mangiatordi, G. F.
Design, Synthesis, and Biological Evaluation of Tetrahydro-β-carboline Derivatives as Selective Sub-Nanomolar Gelatinase Inhibitors
2018-01-01 Mangiatordi, Giuseppe Felice; Guzzo, Tatiana; Rossano, Eugenio Claudio; Trisciuzzi, Daniela; Alberga, Domenico; Fasciglione, Giovanni; Coletta, Massimiliano; Topai, Alessandra; Nicolotti, Orazio
Design, synthesis, biological evaluation, NMR and DFT studies of structurally-simplified trimethoxy benzamides as P-glycoprotein selective inhibitors: the role of molecular flatness
2016-01-01 Stefanachi, Angela; Mangiatordi, Giuseppe Felice; Tardia, Piero; Alberga, Domenico; Leonetti, Francesco; Niso, Mauro; Colabufo, Nicola Antonio; Adamo, Carlo; Nicolotti, Orazio; Cellamare, Saverio
Docking-based classification models for exploratory toxicology studies on high-quality estrogenic experimental data
2015-01-01 Trisciuzzi, Daniela; Alberga, Domenico; Mansouri, K; Judson, R; Cellamare, Saverio; Catto, Marco; Carotti, Angelo; Benfenati, E; Novellino, E; Mangiatordi, Giuseppe Felice; Nicolotti, Orazio
Effects of Different Self-Assembled Monolayers on Thin-Film Morphology: A Combined DFT/MD Simulation Protocol
2015-01-01 Alberga, Domenico; Mangiatordi, Giuseppe Felice; Motta, Alessandro; Nicolotti, Orazio; Lattanzi, Gianluca
Enhancing the Sensitivity of Biotinylated Surfaces by Tailoring the Design of the Mixed Self-Assembled Monolayer Synthesis
2020-01-01 Blasi, D.; Sarcina, L.; Tricase, A.; Stefanachi, A.; Leonetti, F.; Alberga, D.; Mangiatordi, G. F.; Manoli, K.; Scamarcio, G.; Picca, R. A.; Torsi, L.
Exploring the role of elongation Factor-Like 1 (EFL1) in Shwachman-Diamond syndrome through molecular dynamics
2019-01-01 Delre, P.; Alberga, D.; Gijsbers, A.; Sanchez-Puig, N.; Nicolotti, O.; Saviano, M.; Siliqi, D.; Mangiatordi, G. F.
Human aquaporin-4 and molecular modeling: Historical perspective and view to the future
2016-01-01 Mangiatordi, Giuseppe Felice; Alberga, Domenico; Trisciuzzi, Daniela; Lattanzi, Gianluca; Nicolotti, Orazio
Identification of a point mutation impairing the binding between aquaporin-4 and neuromyelitis optica Autoantibodies
2014-01-01 Pisani, Francesco; Mola, Maria Grazia; Simone, Laura; Rosito, Stefania; Alberga, Domenico; Mangiatordi, Giuseppe Felice; Lattanzi, Gianluca; Nicolotti, Orazio; Frigeri, Antonio; Svelto, Maria; Nicchia, GRAZIA PAOLA
Titolo | Data di pubblicazione | Autore(i) | File |
---|---|---|---|
A New Approach for Drug Target and Bioactivity Prediction: The Multifingerprint Similarity Search Algorithm (MuSSeL) | 1-gen-2019 | Alberga, Domenico; Trisciuzzi, Daniela; Montaruli, Michele; Leonetti, Francesco; Mangiatordi, Giuseppe Felice; Nicolotti, Orazio | |
A rational approach to elucidate human monoamine oxidase molecular selectivity | 1-gen-2017 | Mangiatordi, Giuseppe Felice; Alberga, Domenico; Pisani, Leonardo; Gadaleta, Domenico; Trisciuzzi, Daniela; Farina, Roberta; Carotti, A; Lattanzi, G; Catto, Marco; Nicolotti, Orazio | |
Accelerating drug discovery by early protein drug target prediction based on a multi-fingerprint similarity search † | 1-gen-2019 | Montaruli, M.; Alberga, D.; Ciriaco, F.; Trisciuzzi, D.; Tondo, A. R.; Mangiatordi, G. F.; Nicolotti, O. | |
ALPACA: A machine Learning Platform for Affinity and selectivity profiling of CAnnabinoids receptors modulators | 1-gen-2023 | Delre, Pietro; Contino, Marialessandra; Alberga, Domenico; Saviano, Michele; Corriero, Nicola; Mangiatordi, Giuseppe Felice | |
AMALPHI: A Machine Learning Platform for Predicting Drug-Induced PhospholIpidosis | 1-gen-2023 | Lomuscio, Maria Cristina; Abate, Carmen; Alberga, Domenico; Laghezza, Antonio; Corriero, Nicola; Colabufo, Nicola Antonio; Saviano, Michele; Delre, Pietro; Mangiatordi, Giuseppe Felice | |
Automated identification of structurally heterogeneous and patentable antiproliferative hits as potential tubulin inhibitors | 1-gen-2018 | Mangiatordi, G. F.; Trisciuzzi, D.; Iacobazzi, R.; Denora, N.; Pisani, L.; Catto, M.; Leonetti, F.; Alberga, D.; Nicolotti, O. | |
CATMoS: Collaborative Acute Toxicity Modeling Suite | 1-gen-2021 | Mansouri, K; Karmaus, Al; Fitzpatrick, J; Patlewicz, G; Pradeep, P; Alberga, D; Alepee, N; Allen, Teh; Allen, D; Alves, Vm; Andrade, Ch; Auernhammer, Tr; Ballabio, D; Bell, S; Benfenati, E; Bhattacharya, S; Bastos, Jv; Boyd, S; Brown, Jb; Capuzzi, Sj; Chushak, Y; Ciallella, H; Clark, Am; Consonni, V; Daga, Pr; Ekins, S; Farag, S; Fedorov, M; Fourches, D; Gadaleta, D; Gao, F; Gearhart, Jm; Goh, G; Goodman, Jm; Grisoni, F; Grulke, Cm; Hartung, T; Hirn, M; Karpov, P; Korotcov, A; Lavado, Gj; Lawless, M; Li, Xh; Luechtefeld, T; Lunghini, F; Mangiatordi, Gf; Marcou, G; Marsh, D; Martin, T; Mauri, A; Muratov, En; Myatt, Gj; Nguyen, Dt; Nicolotti, O; Note, R; Pande, P; Parks, Ak; Peryea, T; Polash, Ah; Rallo, R; Roncaglioni, A; Rowlands, C; Ruiz, P; Russo, Dp; Sayed, A; Sayre, R; Sheils, T; Siegel, C; Silva, Ac; Simeonov, A; Sosnin, S; Southall, N; Strickland, J; Tang, Y; Teppen, B; Tetko, Iv; Thomas, D; Tkachenko, V; Todeschini, R; Toma, C; Tripodi, I; Trisciuzzi, D; Tropsha, A; Varnek, A; Vukovic, K; Wang, Zy; Wang, Lg; Waters, Km; Wedlake, Aj; Wijeyesakere, Sj; Wilson, D; Xiao, Zj; Yang, Hb; Zahoranszky-Kohalmi, G; Zakharov, Av; Zhang, Ff; Zhang, Z; Zhao, Tg; Zhu, H; Zorn, Km; Casey, W; Kleinstreuer, Nc | |
Challenging AQP4 druggability for NMO-IgG antibody binding using molecular dynamics and molecular interaction fields | 1-gen-2015 | Mangiatordi, Giuseppe Felice; Alberga, Domenico; Siragusa, Lydia; Goracci, Laura; Lattanzi, Gianluca; Nicolotti, Orazio | |
ClC-1 mutations in myotonia congenita patients: insights into molecular gating mechanisms and genotype-phenotype correlation | 1-gen-2015 | Imbrici, P; Maggi, L; Mangiatordi, G F; Dinardo, M M; Altamura, Concetta; Brugnoni, R; Alberga, D; Pinter, G L; Ricci, G; Siciliano, G; Micheli, R; Annicchiarico, G; Lattanzi, G; Nicolotti, O; Morandi, L; Bernasconi, P; Desaphy, J-F; Mantegazza, R; Camerino, D C | |
Compara: Collaborative modeling project for androgen receptor activity | 1-gen-2020 | Mansouri, K.; Kleinstreuer, N.; Abdelaziz, A. M.; Alberga, D.; Alves, V. M.; Andersson, P. L.; Andrade, C. H.; Bai, F.; Balabin, I.; Ballabio, D.; Benfenati, E.; Bhhatarai, B.; Boyer, S.; Chen, J.; Consonni, V.; Farag, S.; Fourches, D.; Garcia-Sosa, A. T.; Gramatica, P.; Grisoni, F.; Grulke, C. M.; Hong, H.; Horvath, D.; Hu, X.; Huang, R.; Jeliazkova, N.; Li, J.; Li, X.; Liu, H.; Manganelli, S.; Mangiatordi, G. F.; Maran, U.; Marcou, G.; Martin, T.; Muratov, E.; Nguyen, D. -T.; Nicolotti, O.; Nikolov, N. G.; Norinder, U.; Papa, E.; Petitjean, M.; Piir, G.; Pogodin, P.; Poroikov, V.; Qiao, X.; Richard, A. M.; Roncaglioni, A.; Ruiz, P.; Rupakheti, C.; Sakkiah, S.; Sangion, A.; Schramm, K. -W.; Selvaraj, C.; Shah, I.; Sild, S.; Sun, L.; Taboureau, O.; Tang, Y.; Tetko, I. V.; Todeschini, R.; Tong, W.; Trisciuzzi, D.; Tropsha, A.; Van Den Driessche, G.; Varnek, A.; Wang, Z.; Wedebye, E. B.; Williams, A. J.; Xie, H.; Zakharov, A. V.; Zheng, Z.; Judson, R. S. | |
De Novo Drug Design of Targeted Chemical Libraries Based on Artificial Intelligence and Pair-Based Multiobjective Optimization | 1-gen-2020 | Alberga, Domenico; Gambacorta, Nicola; Trisciuzzi, Daniela; Ciriaco, Fulvio; Amoroso, Nicola; Nicolotti, Orazio | |
DeLA-DrugSelf: Empowering multi-objective de novo design through SELFIES molecular representation | 1-gen-2024 | Alberga, D.; Lamanna, G.; Graziano, G.; Delre, P.; Lomuscio, M. C.; Corriero, N.; Ligresti, A.; Siliqi, D.; Saviano, M.; Contino, M.; Stefanachi, A.; Mangiatordi, G. F. | |
Design, Synthesis, and Biological Evaluation of Tetrahydro-β-carboline Derivatives as Selective Sub-Nanomolar Gelatinase Inhibitors | 1-gen-2018 | Mangiatordi, Giuseppe Felice; Guzzo, Tatiana; Rossano, Eugenio Claudio; Trisciuzzi, Daniela; Alberga, Domenico; Fasciglione, Giovanni; Coletta, Massimiliano; Topai, Alessandra; Nicolotti, Orazio | |
Design, synthesis, biological evaluation, NMR and DFT studies of structurally-simplified trimethoxy benzamides as P-glycoprotein selective inhibitors: the role of molecular flatness | 1-gen-2016 | Stefanachi, Angela; Mangiatordi, Giuseppe Felice; Tardia, Piero; Alberga, Domenico; Leonetti, Francesco; Niso, Mauro; Colabufo, Nicola Antonio; Adamo, Carlo; Nicolotti, Orazio; Cellamare, Saverio | |
Docking-based classification models for exploratory toxicology studies on high-quality estrogenic experimental data | 1-gen-2015 | Trisciuzzi, Daniela; Alberga, Domenico; Mansouri, K; Judson, R; Cellamare, Saverio; Catto, Marco; Carotti, Angelo; Benfenati, E; Novellino, E; Mangiatordi, Giuseppe Felice; Nicolotti, Orazio | |
Effects of Different Self-Assembled Monolayers on Thin-Film Morphology: A Combined DFT/MD Simulation Protocol | 1-gen-2015 | Alberga, Domenico; Mangiatordi, Giuseppe Felice; Motta, Alessandro; Nicolotti, Orazio; Lattanzi, Gianluca | |
Enhancing the Sensitivity of Biotinylated Surfaces by Tailoring the Design of the Mixed Self-Assembled Monolayer Synthesis | 1-gen-2020 | Blasi, D.; Sarcina, L.; Tricase, A.; Stefanachi, A.; Leonetti, F.; Alberga, D.; Mangiatordi, G. F.; Manoli, K.; Scamarcio, G.; Picca, R. A.; Torsi, L. | |
Exploring the role of elongation Factor-Like 1 (EFL1) in Shwachman-Diamond syndrome through molecular dynamics | 1-gen-2019 | Delre, P.; Alberga, D.; Gijsbers, A.; Sanchez-Puig, N.; Nicolotti, O.; Saviano, M.; Siliqi, D.; Mangiatordi, G. F. | |
Human aquaporin-4 and molecular modeling: Historical perspective and view to the future | 1-gen-2016 | Mangiatordi, Giuseppe Felice; Alberga, Domenico; Trisciuzzi, Daniela; Lattanzi, Gianluca; Nicolotti, Orazio | |
Identification of a point mutation impairing the binding between aquaporin-4 and neuromyelitis optica Autoantibodies | 1-gen-2014 | Pisani, Francesco; Mola, Maria Grazia; Simone, Laura; Rosito, Stefania; Alberga, Domenico; Mangiatordi, Giuseppe Felice; Lattanzi, Gianluca; Nicolotti, Orazio; Frigeri, Antonio; Svelto, Maria; Nicchia, GRAZIA PAOLA |