Sfoglia per Autore
Papio baboon species indicative Alu elements
2017-01-01 Walker, Jerilyn A.; Jordan, Vallmer E.; Steely, Cody J.; Beckstrom, Thomas O.; Mcdaniel, Cullen L.; St Romain, Corey P.; Bennett, Emily C.; Robichaux, Arianna; Clement, Brooke N.; Konkel, Miriam K.; Batzer, Mark A.; Rogers, Jeffrey; Harris, R. Alan; Raveendran, Muthuswamy; Liu, Yue; Murali, Shwetha; Vilgalys, Tauras P.; Walker, Jerilyn A.; Konkel, Miriam K.; Jordan, Vallmer E.; Steely, Cody J.; Beckstrom, Thomas O.; Thomas, Gregg W. C.; Pagel, Kymberleigh A.; Pejaver, Vikas; Catacchio, Claudia R.; Archidiacono, Nicoletta; Ventura, Mario; Marra-Campanale, Alessia; Palazzo, Antonio; Capozzi, Oronzo; Raja, Archana; Huddleston, John; Quick, Veronica Searles; Karimpour-Fard, Anis; Schrempf, Dominik; de Manuel Montero, Marc; Billis, Konstantinos; Martin, Fergal J.; Muffato, Matthieu; Athanasiadis, Georgios; Bergey, Christina; Burrell, Andrew; Cheng, Jade; Cox, Laura; Else, James; Han, Yi.; Kopp, Gisela H.; Kothe, Maximilian; Leppälä, Kalle; Noll, Angela; Pecotte, Jera; Pipes, Lenore; Rice, Karen; Mason, Christopher E.; Disotell, Todd; Phillips-Conroy, Jane; Walter, Lutz; Munch, Kasper; Mailund, Thomas; Schierup, Mikkel; Kosiol, Carolin; Vinar, Tomas; Sikela, James M.; Zinner, Dietmar; Roos, Christian; Jolly, Clifford J.; Radivojac, Predrag; Stanyon, Roscoe; Rocchi, Mariano; Eichler, Evan E.; Aken, Bronwen; Hahn, Matthew W.; Batzer, Mark A.; Marques-Bonet, Tomas; Tung, Jenny; Muzny, Donna M.; Gibbs, Richard A.; Worley, Kim C.
A Short Indel-Lacking-Resistance Gene Triggers Silencing of the Photosynthetic Machinery Components Through TYLCSV-Associated Endogenous siRNAs in Tomato
2018-01-01 Chiumenti, Michela; Catacchio, Claudia Rita; Miozzi, Laura; Pirovano, Walter; Ventura, Mario; Pantaleo, Vitantonio
Analysis of lineage-specific Alu subfamilies in the genome of the olive baboon, Papio anubis
2018-01-01 Steely, Cody J.; Baker, Jasmine N.; Walker, Jerilyn A.; Loupe, Charles D.; Batzer, Mark A.; Rogers, Jeffrey; Harris, R. Alan; Raveendran, Muthuswamy; Liu, Yue; Murali, Shwetha; Vilgalys, Tauras P.; Walker, Jerilyn A.; Konkel, Miriam K.; Jordan, Vallmer E.; Steely, Cody J.; Beckstrom, Thomas O.; Thomas, Gregg W. C.; Pagel, Kymberleigh A.; Pejaver, Vikas; Catacchio, Claudia R.; Archidiacono, Nicoletta; Ventura, Mario; Marra-Campanale, Alessia; Palazzo, Antonio; Capozzi, Oronzo; Raja, Archana; Huddleston, John; Quick, Veronica Searles; Karimpour-Fard, Anis; Schrempf, Dominik; de Manuel Montero, Marc; Billis, Konstantinos; Martin, Fergal J.; Muffato, Matthieu; Athanasiadis, Georgios; Bergey, Christina; Burrell, Andrew; Cheng, Jade; Cox, Laura; Else, James; Han, Yi.; Kopp, Gisela H.; Kothe, Maximilian; Leppälä, Kalle; Noll, Angela; Pecotte, Jera; Pipes, Lenore; Rice, Karen; Mason, Christopher E.; Disotell, Todd; Phillips-Conroy, Jane; Walter, Lutz; Munch, Kasper; Mailund, Thomas; Schierup, Mikkel; Kosiol, Carolin; Vinar, Tomas; Sikela, James M.; Zinner, Dietmar; Roos, Christian; Jolly, Clifford J.; Radivojac, Predrag; Stanyon, Roscoe; Rocchi, Mariano; Eichler, Evan E.; Aken, Bronwen; Hahn, Matthew W.; Batzer, Mark A.; Marques-Bonet, Tomas; Tung, Jenny; Muzny, Donna M.; Gibbs, Richard A.; Worley, Kim C.
Inversion variants in human and primate genomes
2018-01-01 Catacchio, Claudia Rita; Maggiolini, Flavia Angela Maria; D'Addabbo, Pietro; Bitonto, Miriana; Capozzi, Oronzo; Signorile, Martina Lepore; Miroballo, Mattia; Archidiacono, Nicoletta; Eichler, Evan E; Ventura, Mario; Antonacci, Francesca
A computational reconstruction of Papio phylogeny using Alu insertion polymorphisms
2018-01-01 Jordan, Vallmer E.; Walker, Jerilyn A.; Beckstrom, Thomas O.; Steely, Cody J.; Mcdaniel, Cullen L.; St Romain, Corey P.; Worley, Kim C.; Phillips-Conroy, Jane; Jolly, Clifford J.; Rogers, Jeffrey; Konkel, Miriam K.; Batzer, Mark A.; Rogers, Jeffrey; Harris, R. Alan; Raveendran, Muthuswamy; Liu, Yue; Murali, Shwetha; Vilgalys, Tauras P.; Walker, Jerilyn A.; Konkel, Miriam K.; Jordan, Vallmer E.; Steely, Cody J.; Beckstrom, Thomas O.; Thomas, Gregg W. C.; Pagel, Kymberleigh A.; Pejaver, Vikas; Catacchio, Claudia R.; Archidiacono, Nicoletta; Ventura, Mario; Marra-Campanale, Alessia; Palazzo, Antonio; Capozzi, Oronzo; Raja, Archana; Huddleston, John; Quick, Veronica Searles; Karimpour-Fard, Anis; Schrempf, Dominik; de Manuel Montero, Marc; Billis, Konstantinos; Martin, Fergal J.; Muffato, Matthieu; Athanasiadis, Georgios; Bergey, Christina; Burrell, Andrew; Cheng, Jade; Cox, Laura; Else, James; Han, Yi.; Kopp, Gisela H.; Kothe, Maximilian; Leppälä, Kalle; Noll, Angela; Pecotte, Jera; Pipes, Lenore; Rice, Karen; Mason, Christopher E.; Disotell, Todd; Phillips-Conroy, Jane; Walter, Lutz; Munch, Kasper; Mailund, Thomas; Schierup, Mikkel; Kosiol, Carolin; Vinar, Tomas; Sikela, James M.; Zinner, Dietmar; Roos, Christian; Jolly, Clifford J.; Radivojac, Predrag; Stanyon, Roscoe; Rocchi, Mariano; Eichler, Evan E.; Aken, Bronwen; Hahn, Matthew W.; Batzer, Mark A.; Marques-Bonet, Tomas; Tung, Jenny; Muzny, Donna M.; Gibbs, Richard A.; Worley, Kim C.
Computational detection and experimental validation of segmental duplications and associated copy number variations in water buffalo (Bubalus bubalis)
2019-01-01 Liu, Shuli; Kang, Xiaolong; Catacchio, Claudia R.; Liu, Mei; Fang, Lingzhao; Schroeder, Steven G.; Li, Wenli; Rosen, Benjamin D.; Iamartino, Daniela; Iannuzzi, Leopoldo; Sonstegard, Tad S.; Van Tassell, Curtis P.; Ventura, Mario; Low, Wai Yee; Williams, John L.; Bickhart, Derek M.; Liu, George E.
Alu insertion polymorphisms shared by Papio baboons and Theropithecus gelada reveal an intertwined common ancestry
2019-01-01 Walker, J. A.; Jordan, V. E.; Storer, J. M.; Steely, C. J.; Gonzalez-Quiroga, P.; Beckstrom, T. O.; Rewerts, L. C.; S, t. Romain C. P.; Rockwell, C. E.; Rogers, J.; Jolly, C. J.; Konkel, M. K.; Batzer, M. A.; Harris, R. A.; Raveendran, M.; Liu, Y.; Murali, S.; Vilgalys, T. P.; Thomas, G. W. C.; Pagel, K. A.; Pejaver, V.; Catacchio, C. R.; Archidiacono, N.; Ventura, M.; Marra-Campanale, A.; Palazzo, A.; Capozzi, O.; Raja, A.; Huddleston, J.; Quick, V. S.; Karimpour-Fard, A.; Schrempf, D.; de Manuel Montero, M.; Billis, K.; Martin, F. J.; Muffato, M.; Athanasiadis, G.; Bergey, C.; Burrell, A.; Cheng, J.; Cox, L.; Else, J.; Han, Y.; Kopp, G. H.; Kothe, M.; Leppala, K.; Noll, A.; Pecotte, J.; Pipes, L.; Rice, K.; Mason, C. E.; Disotell, T.; Phillips-Conroy, J.; Walter, L.; Munch, K.; Mailund, T.; Schierup, M.; Kosiol, C.; Vinar, T.; Sikela, J. M.; Zinner, D.; Roos, C.; Radivojac, P.; Stanyon, R.; Rocchi, M.; Eichler, E. E.; Aken, B.; Hahn, M. W.; Marques-Bonet, T.; Tung, J.; Muzny, D. M.; Gibbs, R. A.; Worley, K. C.
Transcriptomic and genomic structural variation analyses on grape cultivars reveal new insights into the genotype-dependent responses to water stress
2019-01-01 Catacchio, C. R.; Alagna, F.; Perniola, R.; Bergamini, C.; Rotunno, S.; Calabrese, F. M.; Crupi, P.; Antonacci, D.; Ventura, M.; Cardone, M. F.
The comparative genomics and complex population history of Papio baboons
2019-01-01 Rogers, Jeffrey; Raveendran, Muthuswamy; Alan Harris, R.; Mailund, Thomas; Leppälä, Kalle; Athanasiadis, Georgios; Heide Schierup, Mikkel; Cheng, Jade; Munch, Kasper; Walker, Jerilyn A.; Konkel, Miriam K.; Jordan, Vallmer; Steely, Cody J.; Beckstrom, Thomas O.; Bergey, Christina; Burrell, Andrew; Schrempf, Dominik; Noll, Angela; Kothe, Maximillian; Kopp, Gisela H.; Liu, Yue; Murali, Shwetha; Billis, Konstantinos; Martin, Fergal J.; Muffato, Matthieu; Cox, Laura; Else, James; Disotell, Todd; Muzny, Donna M.; Phillips-Conroy, Jane; Aken, Bronwen; Eichler, Evan E.; Marques-Bonet, Tomas; Kosiol, Carolin; Batzer, Mark A.; Hahn, Matthew W.; Tung, Jenny; Zinner, Dietmar; Roos, Christian; Jolly, Clifford J.; Gibbs, Richard A.; Worley, Kim C.; Aken1, Bronwen; Archidiacono, Nicoletta; Athanasiadis, Georgios; Batzer, Mark A.; Beckstrom, Thomas O.; Bergey, Christina; Billis, Konstantinos; Burrell, Andrew; Capozzi, Oronzo; Catacchio, Claudia R.; Cheng, Jade; Cox, Laura A.; Dinh, Huyen H.; Disotell, Todd; Doddapaneni, Harshavardhan; Eichler, Evan E.; Else, James; Gibbs, Richard A.; Hahn, Matthew W.; Han, Yi; Alan Harris, R.; Huddleston, John; Jhangiani, Shalini N.; Jolly, Clifford J.; Jordan, Vallmer E.; Karimpour-Fard, Anis; Konkel, Miriam K.; Kopp, Gisela H.; Korchina, Viktoriya; Kosiol, Carolin; Kothe, Maximillian; Kovar, Christie L.; Kuderna, Lukas; Lee, Sandra L.; Leppälä, Kalle; Liu, Xiaoming; Liu, Yue; Mailund, Thomas; Marques-Bonet, Tomas; Marra-Campanale, Alessia; Martin, Fergal J.; Mason, Christopher E.; de Manuel Montero, Marc; Muffato, Matthieu; Munch, Kasper; Murali, Shwetha; Muzny, Donna M.; Noll, Angela; Pagel, Kymberleigh A.; Palazzo, Antonio; Pecotte, Jera; Pejaver, Vikas; Phillips-Conroy, Jane; Pipes, Lenore; Searles Quick, Veronica; Radivojac, Predrag; Raja, Archana; Raney, Brian J.; Raveendran, Muthuswamy; Rice, Karen; Rocchi, Mariano; Rogers, Jeffrey; Roos, Christian; Heide Schierup, Mikkel; Schrempf, Dominik; Sikela, James M.; Stanyon, Roscoe; Steely, Cody J.; Thomas, Gregg W. C.; Tung, Jenny; Ventura, Mario; Vilgalys, Tauras P.; Vinar, Tomas; Walker, Jerilyn A.; Walter, Lutz; Worley, Kim C.; Zinner, Dietmar
Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility
2020-01-01 Warren, W. C.; Harris, R. A.; Haukness, M.; Fiddes, I. T.; Murali, S. C.; Fernandes, J.; Dishuck, P. C.; Storer, J. M.; Raveendran, M.; Hillier, L. W.; Porubsky, D.; Mao, Y.; Gordon, D.; Vollger, M. R.; Lewis, A. P.; Munson, K. M.; Devogelaere, E.; Armstrong, J.; Diekhans, M.; Walker, J. A.; Tomlinson, C.; Graves-Lindsay, T. A.; Kremitzki, M.; Salama, S. R.; Audano, P. A.; Escalona, M.; Maurer, N. W.; Antonacci, F.; Mercuri, L.; Maggiolini, F. A. M.; Catacchio, C. R.; Underwood, J. G.; O'Connor, D. H.; Sanders, A. D.; Korbel, J. O.; Ferguson, B.; Kubisch, H. M.; Picker, L.; Kalin, N. H.; Rosene, D.; Levine, J.; Abbott, D. H.; Gray, S. B.; Sanchez, M. M.; Kovacs-Balint, Z. A.; Kemnitz, J. W.; Thomasy, S. M.; Roberts, J. A.; Kinnally, E. L.; Capitanio, J. P.; Skene, J. H. P.; Platt, M.; Cole, S. A.; Green, R. E.; Ventura, M.; Wiseman, R. W.; Paten, B.; Batzer, M. A.; Rogers, J.; Eichler, E. E.
Single-cell strand sequencing of a macaque genome reveals multiple nested inversions and breakpoint reuse during primate evolution
2020-01-01 Maria Maggiolini, F. A.; Sanders, A. D.; Shew, C. J.; Sulovari, A.; Mao, Y.; Puig, M.; Catacchio, C. R.; Dellino, M.; Palmisano, D.; Mercuri, L.; Bitonto, M.; Porubsky, D.; Caceres, M.; Eichler, E. E.; Ventura, M.; Dennis, M. Y.; Korbel, J. O.; Antonacci, F.
Evolutionary dynamics of the POTE gene family in human and nonhuman primates
2020-01-01 Maggiolini, F. A. M.; Mercuri, L.; Antonacci, F.; Anaclerio, F.; Calabrese, F. M.; Lorusso, N.; L'Abbate, A.; Sorensen, M.; Giannuzzi, G.; Eichler, E. E.; Catacchio, C. R.; Ventura, M.
An evolutionary driver of interspersed segmental duplications in primates
2020-01-01 Cantsilieris, Stuart; Sunkin, Susan M; Johnson, Matthew E; Anaclerio, Fabio; Huddleston, John; Baker, Carl; Dougherty, Max L; Underwood, Jason G; Sulovari, Arvis; Hsieh, Pinghsun; Mao, Yafei; Catacchio, Claudia Rita; Malig, Maika; Welch, AnneMarie E; Sorensen, Melanie; Munson, Katherine M; Jiang, Weihong; Girirajan, Santhosh; Ventura, Mario; Lamb, Bruce T; Conlon, Ronald A; Eichler, Evan E
Colonization of Wild Saccharomyces cerevisiae Strains in a New Winery
2020-01-01 Abdo, Hany; Catacchio, Claudia R.; Ventura, Mario; D’Addabbo, Pietro; Calabrese, Francesco Maria; Laurent, Julie; David-Vaizant, Vanessa; Alexandre, Hervé; Guilloux-Bénatier, Michèle; Rousseaux, Sandrine
The establishment of a fungal consortium in a new winery
2020-01-01 Abdo, Hany; Catacchio, Claudia Rita; Ventura, Mario; D'Addabbo, Pietro; Alexandre, Hervé; Guilloux-Bénatier, Michèle; Rousseaux, Sandrine
7q35q36.3 deletion and concomitant 20q13.2q13.33 duplication in a newborn: familiar case
2021-01-01 Dell'Edera, D; Allegretti, A; Forte, F; Dell'Edera, Ra; Dell'Edera, Mt; Epifania, Aa; Mercuri, L; Catacchio, Cr; Mitidieri, A; Simone, F; Ventura, M
Genomic and personalized medicine approaches for substance use disorders (SUDs) looking at genome-wide association studies
2021-01-01 Cozzoli, D.; Daponte, A.; De Fazio, S.; Ariano, V.; Quaranta, M. R.; Leone, V.; Ostuni, A.; Casanova, M.; Catacchio, C. R.; Ventura, M.; Montinaro, F.
A high-quality bonobo genome refines the analysis of hominid evolution
2021-01-01 Mao, Yafei; Catacchio, Claudia R.; Hillier, LaDeana W.; Porubsky, David; Li, Ruiyang; Sulovari, Arvis; Fernandes, Jason D.; Montinaro, Francesco; Gordon, David S.; Storer, Jessica M.; Haukness, Marina; Fiddes, Ian T.; Murali, Shwetha Canchi; Dishuck, Philip C.; Hsieh, Pinghsun; Harvey, William T.; Audano, Peter A.; Mercuri, Ludovica; Piccolo, Ilaria; Antonacci, Francesca; Munson, Katherine M.; Lewis, Alexandra P.; Baker, Carl; Underwood, Jason G.; Hoekzema, Kendra; Huang, Tzu-Hsueh; Sorensen, Melanie; Walker, Jerilyn A.; Hoffman, Jinna; Thibaud-Nissen, Françoise; Salama, Sofie R.; Pang, Andy W. C.; Lee, Joyce; Hastie, Alex R.; Paten, Benedict; Batzer, Mark A.; Diekhans, Mark; Ventura, Mario; Eichler, Evan E.
A systematic mapping study on machine learning techniques for the prediction of CRISPR/Cas9 sgRNA target cleavage
2022-01-01 Dimauro, G.; Barletta, V. S.; Catacchio, C. R.; Colizzi, L.; Maglietta, R.; Ventura, M.
Genome characterization and CRISPR-Cas9 editing of a human neocentromere
2022-01-01 Palazzo, Antonio; Piccolo, Ilaria; Minervini, Crescenzio Francesco; Purgato, Stefania; Capozzi, Oronzo; D'Addabbo, Pietro; Cumbo, Cosimo; Albano, Francesco; Rocchi, Mariano; Catacchio, Claudia Rita
| Titolo | Data di pubblicazione | Autore(i) | File |
|---|---|---|---|
| Papio baboon species indicative Alu elements | 1-gen-2017 | Walker, Jerilyn A.; Jordan, Vallmer E.; Steely, Cody J.; Beckstrom, Thomas O.; Mcdaniel, Cullen L.; St Romain, Corey P.; Bennett, Emily C.; Robichaux, Arianna; Clement, Brooke N.; Konkel, Miriam K.; Batzer, Mark A.; Rogers, Jeffrey; Harris, R. Alan; Raveendran, Muthuswamy; Liu, Yue; Murali, Shwetha; Vilgalys, Tauras P.; Walker, Jerilyn A.; Konkel, Miriam K.; Jordan, Vallmer E.; Steely, Cody J.; Beckstrom, Thomas O.; Thomas, Gregg W. C.; Pagel, Kymberleigh A.; Pejaver, Vikas; Catacchio, Claudia R.; Archidiacono, Nicoletta; Ventura, Mario; Marra-Campanale, Alessia; Palazzo, Antonio; Capozzi, Oronzo; Raja, Archana; Huddleston, John; Quick, Veronica Searles; Karimpour-Fard, Anis; Schrempf, Dominik; de Manuel Montero, Marc; Billis, Konstantinos; Martin, Fergal J.; Muffato, Matthieu; Athanasiadis, Georgios; Bergey, Christina; Burrell, Andrew; Cheng, Jade; Cox, Laura; Else, James; Han, Yi.; Kopp, Gisela H.; Kothe, Maximilian; Leppälä, Kalle; Noll, Angela; Pecotte, Jera; Pipes, Lenore; Rice, Karen; Mason, Christopher E.; Disotell, Todd; Phillips-Conroy, Jane; Walter, Lutz; Munch, Kasper; Mailund, Thomas; Schierup, Mikkel; Kosiol, Carolin; Vinar, Tomas; Sikela, James M.; Zinner, Dietmar; Roos, Christian; Jolly, Clifford J.; Radivojac, Predrag; Stanyon, Roscoe; Rocchi, Mariano; Eichler, Evan E.; Aken, Bronwen; Hahn, Matthew W.; Batzer, Mark A.; Marques-Bonet, Tomas; Tung, Jenny; Muzny, Donna M.; Gibbs, Richard A.; Worley, Kim C. | |
| A Short Indel-Lacking-Resistance Gene Triggers Silencing of the Photosynthetic Machinery Components Through TYLCSV-Associated Endogenous siRNAs in Tomato | 1-gen-2018 | Chiumenti, Michela; Catacchio, Claudia Rita; Miozzi, Laura; Pirovano, Walter; Ventura, Mario; Pantaleo, Vitantonio | |
| Analysis of lineage-specific Alu subfamilies in the genome of the olive baboon, Papio anubis | 1-gen-2018 | Steely, Cody J.; Baker, Jasmine N.; Walker, Jerilyn A.; Loupe, Charles D.; Batzer, Mark A.; Rogers, Jeffrey; Harris, R. Alan; Raveendran, Muthuswamy; Liu, Yue; Murali, Shwetha; Vilgalys, Tauras P.; Walker, Jerilyn A.; Konkel, Miriam K.; Jordan, Vallmer E.; Steely, Cody J.; Beckstrom, Thomas O.; Thomas, Gregg W. C.; Pagel, Kymberleigh A.; Pejaver, Vikas; Catacchio, Claudia R.; Archidiacono, Nicoletta; Ventura, Mario; Marra-Campanale, Alessia; Palazzo, Antonio; Capozzi, Oronzo; Raja, Archana; Huddleston, John; Quick, Veronica Searles; Karimpour-Fard, Anis; Schrempf, Dominik; de Manuel Montero, Marc; Billis, Konstantinos; Martin, Fergal J.; Muffato, Matthieu; Athanasiadis, Georgios; Bergey, Christina; Burrell, Andrew; Cheng, Jade; Cox, Laura; Else, James; Han, Yi.; Kopp, Gisela H.; Kothe, Maximilian; Leppälä, Kalle; Noll, Angela; Pecotte, Jera; Pipes, Lenore; Rice, Karen; Mason, Christopher E.; Disotell, Todd; Phillips-Conroy, Jane; Walter, Lutz; Munch, Kasper; Mailund, Thomas; Schierup, Mikkel; Kosiol, Carolin; Vinar, Tomas; Sikela, James M.; Zinner, Dietmar; Roos, Christian; Jolly, Clifford J.; Radivojac, Predrag; Stanyon, Roscoe; Rocchi, Mariano; Eichler, Evan E.; Aken, Bronwen; Hahn, Matthew W.; Batzer, Mark A.; Marques-Bonet, Tomas; Tung, Jenny; Muzny, Donna M.; Gibbs, Richard A.; Worley, Kim C. | |
| Inversion variants in human and primate genomes | 1-gen-2018 | Catacchio, Claudia Rita; Maggiolini, Flavia Angela Maria; D'Addabbo, Pietro; Bitonto, Miriana; Capozzi, Oronzo; Signorile, Martina Lepore; Miroballo, Mattia; Archidiacono, Nicoletta; Eichler, Evan E; Ventura, Mario; Antonacci, Francesca | |
| A computational reconstruction of Papio phylogeny using Alu insertion polymorphisms | 1-gen-2018 | Jordan, Vallmer E.; Walker, Jerilyn A.; Beckstrom, Thomas O.; Steely, Cody J.; Mcdaniel, Cullen L.; St Romain, Corey P.; Worley, Kim C.; Phillips-Conroy, Jane; Jolly, Clifford J.; Rogers, Jeffrey; Konkel, Miriam K.; Batzer, Mark A.; Rogers, Jeffrey; Harris, R. Alan; Raveendran, Muthuswamy; Liu, Yue; Murali, Shwetha; Vilgalys, Tauras P.; Walker, Jerilyn A.; Konkel, Miriam K.; Jordan, Vallmer E.; Steely, Cody J.; Beckstrom, Thomas O.; Thomas, Gregg W. C.; Pagel, Kymberleigh A.; Pejaver, Vikas; Catacchio, Claudia R.; Archidiacono, Nicoletta; Ventura, Mario; Marra-Campanale, Alessia; Palazzo, Antonio; Capozzi, Oronzo; Raja, Archana; Huddleston, John; Quick, Veronica Searles; Karimpour-Fard, Anis; Schrempf, Dominik; de Manuel Montero, Marc; Billis, Konstantinos; Martin, Fergal J.; Muffato, Matthieu; Athanasiadis, Georgios; Bergey, Christina; Burrell, Andrew; Cheng, Jade; Cox, Laura; Else, James; Han, Yi.; Kopp, Gisela H.; Kothe, Maximilian; Leppälä, Kalle; Noll, Angela; Pecotte, Jera; Pipes, Lenore; Rice, Karen; Mason, Christopher E.; Disotell, Todd; Phillips-Conroy, Jane; Walter, Lutz; Munch, Kasper; Mailund, Thomas; Schierup, Mikkel; Kosiol, Carolin; Vinar, Tomas; Sikela, James M.; Zinner, Dietmar; Roos, Christian; Jolly, Clifford J.; Radivojac, Predrag; Stanyon, Roscoe; Rocchi, Mariano; Eichler, Evan E.; Aken, Bronwen; Hahn, Matthew W.; Batzer, Mark A.; Marques-Bonet, Tomas; Tung, Jenny; Muzny, Donna M.; Gibbs, Richard A.; Worley, Kim C. | |
| Computational detection and experimental validation of segmental duplications and associated copy number variations in water buffalo (Bubalus bubalis) | 1-gen-2019 | Liu, Shuli; Kang, Xiaolong; Catacchio, Claudia R.; Liu, Mei; Fang, Lingzhao; Schroeder, Steven G.; Li, Wenli; Rosen, Benjamin D.; Iamartino, Daniela; Iannuzzi, Leopoldo; Sonstegard, Tad S.; Van Tassell, Curtis P.; Ventura, Mario; Low, Wai Yee; Williams, John L.; Bickhart, Derek M.; Liu, George E. | |
| Alu insertion polymorphisms shared by Papio baboons and Theropithecus gelada reveal an intertwined common ancestry | 1-gen-2019 | Walker, J. A.; Jordan, V. E.; Storer, J. M.; Steely, C. J.; Gonzalez-Quiroga, P.; Beckstrom, T. O.; Rewerts, L. C.; S, t. Romain C. P.; Rockwell, C. E.; Rogers, J.; Jolly, C. J.; Konkel, M. K.; Batzer, M. A.; Harris, R. A.; Raveendran, M.; Liu, Y.; Murali, S.; Vilgalys, T. P.; Thomas, G. W. C.; Pagel, K. A.; Pejaver, V.; Catacchio, C. R.; Archidiacono, N.; Ventura, M.; Marra-Campanale, A.; Palazzo, A.; Capozzi, O.; Raja, A.; Huddleston, J.; Quick, V. S.; Karimpour-Fard, A.; Schrempf, D.; de Manuel Montero, M.; Billis, K.; Martin, F. J.; Muffato, M.; Athanasiadis, G.; Bergey, C.; Burrell, A.; Cheng, J.; Cox, L.; Else, J.; Han, Y.; Kopp, G. H.; Kothe, M.; Leppala, K.; Noll, A.; Pecotte, J.; Pipes, L.; Rice, K.; Mason, C. E.; Disotell, T.; Phillips-Conroy, J.; Walter, L.; Munch, K.; Mailund, T.; Schierup, M.; Kosiol, C.; Vinar, T.; Sikela, J. M.; Zinner, D.; Roos, C.; Radivojac, P.; Stanyon, R.; Rocchi, M.; Eichler, E. E.; Aken, B.; Hahn, M. W.; Marques-Bonet, T.; Tung, J.; Muzny, D. M.; Gibbs, R. A.; Worley, K. C. | |
| Transcriptomic and genomic structural variation analyses on grape cultivars reveal new insights into the genotype-dependent responses to water stress | 1-gen-2019 | Catacchio, C. R.; Alagna, F.; Perniola, R.; Bergamini, C.; Rotunno, S.; Calabrese, F. M.; Crupi, P.; Antonacci, D.; Ventura, M.; Cardone, M. F. | |
| The comparative genomics and complex population history of Papio baboons | 1-gen-2019 | Rogers, Jeffrey; Raveendran, Muthuswamy; Alan Harris, R.; Mailund, Thomas; Leppälä, Kalle; Athanasiadis, Georgios; Heide Schierup, Mikkel; Cheng, Jade; Munch, Kasper; Walker, Jerilyn A.; Konkel, Miriam K.; Jordan, Vallmer; Steely, Cody J.; Beckstrom, Thomas O.; Bergey, Christina; Burrell, Andrew; Schrempf, Dominik; Noll, Angela; Kothe, Maximillian; Kopp, Gisela H.; Liu, Yue; Murali, Shwetha; Billis, Konstantinos; Martin, Fergal J.; Muffato, Matthieu; Cox, Laura; Else, James; Disotell, Todd; Muzny, Donna M.; Phillips-Conroy, Jane; Aken, Bronwen; Eichler, Evan E.; Marques-Bonet, Tomas; Kosiol, Carolin; Batzer, Mark A.; Hahn, Matthew W.; Tung, Jenny; Zinner, Dietmar; Roos, Christian; Jolly, Clifford J.; Gibbs, Richard A.; Worley, Kim C.; Aken1, Bronwen; Archidiacono, Nicoletta; Athanasiadis, Georgios; Batzer, Mark A.; Beckstrom, Thomas O.; Bergey, Christina; Billis, Konstantinos; Burrell, Andrew; Capozzi, Oronzo; Catacchio, Claudia R.; Cheng, Jade; Cox, Laura A.; Dinh, Huyen H.; Disotell, Todd; Doddapaneni, Harshavardhan; Eichler, Evan E.; Else, James; Gibbs, Richard A.; Hahn, Matthew W.; Han, Yi; Alan Harris, R.; Huddleston, John; Jhangiani, Shalini N.; Jolly, Clifford J.; Jordan, Vallmer E.; Karimpour-Fard, Anis; Konkel, Miriam K.; Kopp, Gisela H.; Korchina, Viktoriya; Kosiol, Carolin; Kothe, Maximillian; Kovar, Christie L.; Kuderna, Lukas; Lee, Sandra L.; Leppälä, Kalle; Liu, Xiaoming; Liu, Yue; Mailund, Thomas; Marques-Bonet, Tomas; Marra-Campanale, Alessia; Martin, Fergal J.; Mason, Christopher E.; de Manuel Montero, Marc; Muffato, Matthieu; Munch, Kasper; Murali, Shwetha; Muzny, Donna M.; Noll, Angela; Pagel, Kymberleigh A.; Palazzo, Antonio; Pecotte, Jera; Pejaver, Vikas; Phillips-Conroy, Jane; Pipes, Lenore; Searles Quick, Veronica; Radivojac, Predrag; Raja, Archana; Raney, Brian J.; Raveendran, Muthuswamy; Rice, Karen; Rocchi, Mariano; Rogers, Jeffrey; Roos, Christian; Heide Schierup, Mikkel; Schrempf, Dominik; Sikela, James M.; Stanyon, Roscoe; Steely, Cody J.; Thomas, Gregg W. C.; Tung, Jenny; Ventura, Mario; Vilgalys, Tauras P.; Vinar, Tomas; Walker, Jerilyn A.; Walter, Lutz; Worley, Kim C.; Zinner, Dietmar | |
| Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility | 1-gen-2020 | Warren, W. C.; Harris, R. A.; Haukness, M.; Fiddes, I. T.; Murali, S. C.; Fernandes, J.; Dishuck, P. C.; Storer, J. M.; Raveendran, M.; Hillier, L. W.; Porubsky, D.; Mao, Y.; Gordon, D.; Vollger, M. R.; Lewis, A. P.; Munson, K. M.; Devogelaere, E.; Armstrong, J.; Diekhans, M.; Walker, J. A.; Tomlinson, C.; Graves-Lindsay, T. A.; Kremitzki, M.; Salama, S. R.; Audano, P. A.; Escalona, M.; Maurer, N. W.; Antonacci, F.; Mercuri, L.; Maggiolini, F. A. M.; Catacchio, C. R.; Underwood, J. G.; O'Connor, D. H.; Sanders, A. D.; Korbel, J. O.; Ferguson, B.; Kubisch, H. M.; Picker, L.; Kalin, N. H.; Rosene, D.; Levine, J.; Abbott, D. H.; Gray, S. B.; Sanchez, M. M.; Kovacs-Balint, Z. A.; Kemnitz, J. W.; Thomasy, S. M.; Roberts, J. A.; Kinnally, E. L.; Capitanio, J. P.; Skene, J. H. P.; Platt, M.; Cole, S. A.; Green, R. E.; Ventura, M.; Wiseman, R. W.; Paten, B.; Batzer, M. A.; Rogers, J.; Eichler, E. E. | |
| Single-cell strand sequencing of a macaque genome reveals multiple nested inversions and breakpoint reuse during primate evolution | 1-gen-2020 | Maria Maggiolini, F. A.; Sanders, A. D.; Shew, C. J.; Sulovari, A.; Mao, Y.; Puig, M.; Catacchio, C. R.; Dellino, M.; Palmisano, D.; Mercuri, L.; Bitonto, M.; Porubsky, D.; Caceres, M.; Eichler, E. E.; Ventura, M.; Dennis, M. Y.; Korbel, J. O.; Antonacci, F. | |
| Evolutionary dynamics of the POTE gene family in human and nonhuman primates | 1-gen-2020 | Maggiolini, F. A. M.; Mercuri, L.; Antonacci, F.; Anaclerio, F.; Calabrese, F. M.; Lorusso, N.; L'Abbate, A.; Sorensen, M.; Giannuzzi, G.; Eichler, E. E.; Catacchio, C. R.; Ventura, M. | |
| An evolutionary driver of interspersed segmental duplications in primates | 1-gen-2020 | Cantsilieris, Stuart; Sunkin, Susan M; Johnson, Matthew E; Anaclerio, Fabio; Huddleston, John; Baker, Carl; Dougherty, Max L; Underwood, Jason G; Sulovari, Arvis; Hsieh, Pinghsun; Mao, Yafei; Catacchio, Claudia Rita; Malig, Maika; Welch, AnneMarie E; Sorensen, Melanie; Munson, Katherine M; Jiang, Weihong; Girirajan, Santhosh; Ventura, Mario; Lamb, Bruce T; Conlon, Ronald A; Eichler, Evan E | |
| Colonization of Wild Saccharomyces cerevisiae Strains in a New Winery | 1-gen-2020 | Abdo, Hany; Catacchio, Claudia R.; Ventura, Mario; D’Addabbo, Pietro; Calabrese, Francesco Maria; Laurent, Julie; David-Vaizant, Vanessa; Alexandre, Hervé; Guilloux-Bénatier, Michèle; Rousseaux, Sandrine | |
| The establishment of a fungal consortium in a new winery | 1-gen-2020 | Abdo, Hany; Catacchio, Claudia Rita; Ventura, Mario; D'Addabbo, Pietro; Alexandre, Hervé; Guilloux-Bénatier, Michèle; Rousseaux, Sandrine | |
| 7q35q36.3 deletion and concomitant 20q13.2q13.33 duplication in a newborn: familiar case | 1-gen-2021 | Dell'Edera, D; Allegretti, A; Forte, F; Dell'Edera, Ra; Dell'Edera, Mt; Epifania, Aa; Mercuri, L; Catacchio, Cr; Mitidieri, A; Simone, F; Ventura, M | |
| Genomic and personalized medicine approaches for substance use disorders (SUDs) looking at genome-wide association studies | 1-gen-2021 | Cozzoli, D.; Daponte, A.; De Fazio, S.; Ariano, V.; Quaranta, M. R.; Leone, V.; Ostuni, A.; Casanova, M.; Catacchio, C. R.; Ventura, M.; Montinaro, F. | |
| A high-quality bonobo genome refines the analysis of hominid evolution | 1-gen-2021 | Mao, Yafei; Catacchio, Claudia R.; Hillier, LaDeana W.; Porubsky, David; Li, Ruiyang; Sulovari, Arvis; Fernandes, Jason D.; Montinaro, Francesco; Gordon, David S.; Storer, Jessica M.; Haukness, Marina; Fiddes, Ian T.; Murali, Shwetha Canchi; Dishuck, Philip C.; Hsieh, Pinghsun; Harvey, William T.; Audano, Peter A.; Mercuri, Ludovica; Piccolo, Ilaria; Antonacci, Francesca; Munson, Katherine M.; Lewis, Alexandra P.; Baker, Carl; Underwood, Jason G.; Hoekzema, Kendra; Huang, Tzu-Hsueh; Sorensen, Melanie; Walker, Jerilyn A.; Hoffman, Jinna; Thibaud-Nissen, Françoise; Salama, Sofie R.; Pang, Andy W. C.; Lee, Joyce; Hastie, Alex R.; Paten, Benedict; Batzer, Mark A.; Diekhans, Mark; Ventura, Mario; Eichler, Evan E. | |
| A systematic mapping study on machine learning techniques for the prediction of CRISPR/Cas9 sgRNA target cleavage | 1-gen-2022 | Dimauro, G.; Barletta, V. S.; Catacchio, C. R.; Colizzi, L.; Maglietta, R.; Ventura, M. | |
| Genome characterization and CRISPR-Cas9 editing of a human neocentromere | 1-gen-2022 | Palazzo, Antonio; Piccolo, Ilaria; Minervini, Crescenzio Francesco; Purgato, Stefania; Capozzi, Oronzo; D'Addabbo, Pietro; Cumbo, Cosimo; Albano, Francesco; Rocchi, Mariano; Catacchio, Claudia Rita |
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