The Biolog® Phenotype MicroArrays™ (PM) system offers a simple and cheap tool to rapidly providing a high throughput of information about the phenotypes of fungal isolates in a short lapse of time. In order to improve the use of the PM system in fungal ecology studies, in the present work we propose a new statistical protocol based on two approaches, i.e. a functional PCA to describe similarity patterns of growth curves and a Bayesian GAMs to allow inferences on specific growth features, in order to analyse nutrient fungal utilization in a model system including four causal agents of FHB, the natural competitor Fusarium oxysporum and the beneficial isolate Trichoderma gamsii T6085. Analysis of data collected by the Biolog® Phenotype MicroArrays™ (PM) in our biological system showed a different nutritional competitive potential of the four pathogens, as well as an intermediate behaviour of the natural competitor and of our biocontrol agent. This protocol, applicable to different fungal phenotypical studies both at isolate and community level, allows a full exploitation of data obtained by PM system and provides important information about the nutritional pattern of a single isolate compared to those of other fungi, a key information to be exploited in biocontrol strategies.
A statistical protocol to describe differences among nutrient utilization patterns of Fusarium spp. and Trichoderma gamsii
Pollice, Alessio
;
2021-01-01
Abstract
The Biolog® Phenotype MicroArrays™ (PM) system offers a simple and cheap tool to rapidly providing a high throughput of information about the phenotypes of fungal isolates in a short lapse of time. In order to improve the use of the PM system in fungal ecology studies, in the present work we propose a new statistical protocol based on two approaches, i.e. a functional PCA to describe similarity patterns of growth curves and a Bayesian GAMs to allow inferences on specific growth features, in order to analyse nutrient fungal utilization in a model system including four causal agents of FHB, the natural competitor Fusarium oxysporum and the beneficial isolate Trichoderma gamsii T6085. Analysis of data collected by the Biolog® Phenotype MicroArrays™ (PM) in our biological system showed a different nutritional competitive potential of the four pathogens, as well as an intermediate behaviour of the natural competitor and of our biocontrol agent. This protocol, applicable to different fungal phenotypical studies both at isolate and community level, allows a full exploitation of data obtained by PM system and provides important information about the nutritional pattern of a single isolate compared to those of other fungi, a key information to be exploited in biocontrol strategies.I documenti in IRIS sono protetti da copyright e tutti i diritti sono riservati, salvo diversa indicazione.
