FOSSO, Bruno
FOSSO, Bruno
DIPARTIMENTO DI BIOSCIENZE , BIOTECNOLOGIE E AMBIENTE
A bioinformatics workflow for the analysis of transcriptome data generated by deep-sequencing.
2010-01-01 Liciulli, F.; Caratozzolo, M. F.; Cornacchia, S.; D'Elia, D.; D'Erchia, ANNA MARIA; Fosso, B.; Grillo, G.; Liuni, S.; Mangiulli, M.; Manzari, C.; Mignone, F.; Paluscio, A.; Picardi, Ernesto; Sbisà, E.; Tullo, A.; Pesole, Graziano
A comprehensive overview of microbiome data in the light of machine learning applications: categorization, accessibility, and future directions
2024-01-01 Kumar, B.; Lorusso, E.; Fosso, B.; Pesole, G.
A Differential Metabarcoding Approach to Describe Taxonomy Profiles of Bacteria and Archaea in the Saltern of Margherita di Savoia (Italy)
2020-01-01 Leoni, Claudia; Volpicella, Mariateresa; Fosso, Bruno; Manzari, Caterina; Piancone, Elisabetta; Dileo, Maria C G; Arcadi, Erika; Yakimov, Michail; Pesole, Graziano; Ceci, Luigi R
A new and effective experimental and computational workflow for winemaking metagenome analysis.
2012-01-01 Santamaria, M; Marzano, M; Fosso, B; Manzari, C; Tullo, A; Sbisà, E; Mulè, G; Liuni, S; Grieco, F; Cozzi, F; Grillo, G; Licciulli, F; Scioscia, G; Pesole, Graziano
A primer on machine learning techniques for genomic applications
2021-01-01 Monaco, A.; Pantaleo, E.; Amoroso, N.; Lacalamita, A.; Lo Giudice, C.; Fonzino, A.; Fosso, B.; Picardi, E.; Tangaro, S.; Pesole, G.; Bellotti, R.
Accurate detection and quantification of SARS-CoV-2 genomic and subgenomic mRNAs by ddPCR and meta-transcriptomics analysis
2021-01-01 Oranger, A.; Manzari, C.; Chiara, M.; Notario, E.; Fosso, B.; Parisi, A.; Bianco, A.; Iacobellis, M.; D'Avenia, M.; D'Erchia, A. M.; Pesole, G.
Accurate quantification of bacterial abundance in metagenomic DNAs accounting for variable DNA integrity levels
2020-01-01 Manzari, Caterina; Oranger, Annarita; Fosso, Bruno; Piancone, Elisabetta; Pesole, Graziano; D'Erchia, ANNA MARIA
Amplicon-Based Microbiome Profiling: From Second- to Third-Generation Sequencing for Higher Taxonomic Resolution
2023-01-01 Notario, Elisabetta; Visci, Grazia; Fosso, Bruno; Gissi, Carmela; Tanaskovic, Nina; Rescigno, Maria; Marzano, Marinella; Pesole, Graziano
Analysis of microbiome in gastrointestinal stromal tumors: Looking for different players in tumorigenesis and novel therapeutic options
2022-01-01 Ravegnini, Gloria; Fosso, Bruno; Ricci, Riccardo; Gorini, Francesca; Turroni, Silvia; Serrano, Cesar; Pilco‐janeta, Daniel F.; Zhang, Qianqian; Zanotti, Federica; DE ROBERTIS, Mariangela; Nannini, Margherita; Maria , ; Pantaleo, Abbondanza; Hrelia, Patrizia; Angelini, Sabrina
Aquatic microbiome diversity under the influence of jellyfish bloom through the application of an Illumina-based protocol
2013-01-01 Manzari, C; Fosso, B; Marzano, M; Annese, A; Intranuovo, M; D'Erchia, ANNA MARIA; Gissi, Carmela; Picardi, Ernesto; Santamaria, M; Caprioli, R; Scorrano, S; Stabili, L; Piraino, S; Pesole, Graziano
Assessment of Hippocampus guttulatus diet using DNA metabarcoding of faeces
2022-01-01 Lazic, T.; Fosso, B.; Corriero, G.; Balech, B.; Marzano, M.; Pesole, G.; Santamaria, M.; Pierri, C.; Gristina, M.
BALB/c and C57BL/6 Mice Differ in Polyreactive IgA Abundance, which Impacts the Generation of Antigen-Specific IgA and Microbiota Diversity
2015-01-01 Fransen, Floris; Zagato, Elena; Mazzini, Elisa; Fosso, Bruno; Manzari, Caterina; El Aidy, Sahar; Chiavelli, Andrea; D'Erchia, ANNA MARIA; Sethi, Maya K.; Pabst, Oliver; Marzano, Marinella; Moretti, Silvia; Romani, Luigina; Penna, Giuseppe; Pesole, Graziano; Rescigno, Maria
BioMaS: a modular pipeline for Bioinformatic analysis of Metagenomic AmpliconS
2015-01-01 Fosso, Bruno; Santamaria, Monica; Marzano, Marinella; Alonso Alemany, Daniel; Valiente, Gabriel; Donvito, Giacinto; Monaco, Alfonso; Notarangelo, Pasquale; Pesole, Graziano
BioMaS: a modular pipeline for Bioinformatic analysis of Metagenomic ampliconS.
2013-01-01 Fosso, B; Santamaria, M; Marzano, M; Liuni, S; Alonso Alemany, D; Valiente, G; Pesole, Graziano
BioMaS: a modular pipeline for Bioinformatic analysis of Metagenomic Amplicons.
2012-01-01 Fosso, B; Santamaria, M; Marzano, M; Liuni, S; Valiente, G; Pesole, Graziano
BioVeL: A virtual laboratory for data analysis and modelling in biodiversity science and ecology
2016-01-01 Hardisty, Alex R; Bacall, Finn; Beard, Niall; Balcázar Vargas, Maria Paula; Balech, Bachir; Barcza, Zoltán; Bourlat, Sarah J.; Giovanni, Renato; Jong, Yde; Leo, Francesca; Dobor, Laura; Donvito, Giacinto; Fellows, Donal; Guerra, Antonio Fernandez; Ferreira, Nuno; Fetyukova, Yuliya; Fosso, Bruno; Giddy, Jonathan; Goble, Carole; Güntsch, Anton; Haines, Robert; Ernst, Vera Hernández; Hettling, Hannes; Hidy, Dóra; Horváth, Ferenc; Ittzés, Dóra; Ittzés, Péter; Jones, Andrew; Kottmann, Renzo; Kulawik, Robert; Leidenberger, Sonja; Lyytikäinen Saarenmaa, Päivi; Mathew, Cherian; Morrison, Norman; Nenadic, Aleksandra; Hidalga, Abraham Nieva; Obst, Matthias; Oostermeijer, Gerard; Paymal, Elisabeth; Pesole, Graziano; Pinto, Salvatore; Poigné, Axel; Fernandez, Francisco Quevedo; Santamaria, Monica; Saarenmaa, Hannu; Sipos, Gergely; Sylla, Karl Heinz; Tähtinen, Marko; Vicario, Saverio; Vos, Rutger Aldo; Williams, Alan R.; Yilmaz, Pelin
Capitolo 21 - Le analisi di sequenziamento per lo studio del microbiota.
2023-01-01 Defazio, Giuseppe; Fosso, Bruno; Piancone, Elisabetta; Pesole, Graziano
CHARACTERIZATION OF SURFACE LAYER MICROBIAL COMMUNITIES OF ANOPHELES GAMBIAE COMPLEX LARVAL HABITATS IN BURKINA FASO
2017-01-01 Pombi, Marco; Totino, Valentina; Fosso, Bruno; Santamaria, Monica; Guerrieri, Francesca; Bassole, Imael; Guelbeogo, Wamdaogo M.; Sagnon, N'Fale; Iebba, Valerio; Pesole, Graziano; della Torre, Alessandra; Schippa, Serena; Costantini, Carlo
Chicken caecal enterotypes in indigenous Kadaknath and commercial Cobb chicken lines are associated with Campylobacter abundance and influenced by farming practices
2023-01-01 Hay, Melanie C.; Hinsu, Ankit T.; Koringa, Prakash G.; Pandit, Ramesh J.; Liu, Po-Yu; Parekh, Mithil J.; Jakhesara, Subhash J.; Dai, Xiaoxai; Crotta, Matteo; Fosso, Bruno; Limon, Georgina; Guitian, Javier; Tomley, Fiona M.; Xia, Dong; Psifidi, Androniki; Joshi, Chaitanya G.; Blake, Damer P.
Comparative Fecal Microbiota Analysis of Infants With Acute Bronchiolitis Caused or Not Caused by Respiratory Syncytial Virus
2022-01-01 De Maio, F.; Buonsenso, D.; Bianco, D. M.; Giaimo, M.; Fosso, B.; Monzo, F. R.; Sali, M.; Posteraro, B.; Valentini, P.; Sanguinetti, M.
| Titolo | Data di pubblicazione | Autore(i) | File |
|---|---|---|---|
| A bioinformatics workflow for the analysis of transcriptome data generated by deep-sequencing. | 1-gen-2010 | Liciulli, F.; Caratozzolo, M. F.; Cornacchia, S.; D'Elia, D.; D'Erchia, ANNA MARIA; Fosso, B.; Grillo, G.; Liuni, S.; Mangiulli, M.; Manzari, C.; Mignone, F.; Paluscio, A.; Picardi, Ernesto; Sbisà, E.; Tullo, A.; Pesole, Graziano | |
| A comprehensive overview of microbiome data in the light of machine learning applications: categorization, accessibility, and future directions | 1-gen-2024 | Kumar, B.; Lorusso, E.; Fosso, B.; Pesole, G. | |
| A Differential Metabarcoding Approach to Describe Taxonomy Profiles of Bacteria and Archaea in the Saltern of Margherita di Savoia (Italy) | 1-gen-2020 | Leoni, Claudia; Volpicella, Mariateresa; Fosso, Bruno; Manzari, Caterina; Piancone, Elisabetta; Dileo, Maria C G; Arcadi, Erika; Yakimov, Michail; Pesole, Graziano; Ceci, Luigi R | |
| A new and effective experimental and computational workflow for winemaking metagenome analysis. | 1-gen-2012 | Santamaria, M; Marzano, M; Fosso, B; Manzari, C; Tullo, A; Sbisà, E; Mulè, G; Liuni, S; Grieco, F; Cozzi, F; Grillo, G; Licciulli, F; Scioscia, G; Pesole, Graziano | |
| A primer on machine learning techniques for genomic applications | 1-gen-2021 | Monaco, A.; Pantaleo, E.; Amoroso, N.; Lacalamita, A.; Lo Giudice, C.; Fonzino, A.; Fosso, B.; Picardi, E.; Tangaro, S.; Pesole, G.; Bellotti, R. | |
| Accurate detection and quantification of SARS-CoV-2 genomic and subgenomic mRNAs by ddPCR and meta-transcriptomics analysis | 1-gen-2021 | Oranger, A.; Manzari, C.; Chiara, M.; Notario, E.; Fosso, B.; Parisi, A.; Bianco, A.; Iacobellis, M.; D'Avenia, M.; D'Erchia, A. M.; Pesole, G. | |
| Accurate quantification of bacterial abundance in metagenomic DNAs accounting for variable DNA integrity levels | 1-gen-2020 | Manzari, Caterina; Oranger, Annarita; Fosso, Bruno; Piancone, Elisabetta; Pesole, Graziano; D'Erchia, ANNA MARIA | |
| Amplicon-Based Microbiome Profiling: From Second- to Third-Generation Sequencing for Higher Taxonomic Resolution | 1-gen-2023 | Notario, Elisabetta; Visci, Grazia; Fosso, Bruno; Gissi, Carmela; Tanaskovic, Nina; Rescigno, Maria; Marzano, Marinella; Pesole, Graziano | |
| Analysis of microbiome in gastrointestinal stromal tumors: Looking for different players in tumorigenesis and novel therapeutic options | 1-gen-2022 | Ravegnini, Gloria; Fosso, Bruno; Ricci, Riccardo; Gorini, Francesca; Turroni, Silvia; Serrano, Cesar; Pilco‐janeta, Daniel F.; Zhang, Qianqian; Zanotti, Federica; DE ROBERTIS, Mariangela; Nannini, Margherita; Maria , ; Pantaleo, Abbondanza; Hrelia, Patrizia; Angelini, Sabrina | |
| Aquatic microbiome diversity under the influence of jellyfish bloom through the application of an Illumina-based protocol | 1-gen-2013 | Manzari, C; Fosso, B; Marzano, M; Annese, A; Intranuovo, M; D'Erchia, ANNA MARIA; Gissi, Carmela; Picardi, Ernesto; Santamaria, M; Caprioli, R; Scorrano, S; Stabili, L; Piraino, S; Pesole, Graziano | |
| Assessment of Hippocampus guttulatus diet using DNA metabarcoding of faeces | 1-gen-2022 | Lazic, T.; Fosso, B.; Corriero, G.; Balech, B.; Marzano, M.; Pesole, G.; Santamaria, M.; Pierri, C.; Gristina, M. | |
| BALB/c and C57BL/6 Mice Differ in Polyreactive IgA Abundance, which Impacts the Generation of Antigen-Specific IgA and Microbiota Diversity | 1-gen-2015 | Fransen, Floris; Zagato, Elena; Mazzini, Elisa; Fosso, Bruno; Manzari, Caterina; El Aidy, Sahar; Chiavelli, Andrea; D'Erchia, ANNA MARIA; Sethi, Maya K.; Pabst, Oliver; Marzano, Marinella; Moretti, Silvia; Romani, Luigina; Penna, Giuseppe; Pesole, Graziano; Rescigno, Maria | |
| BioMaS: a modular pipeline for Bioinformatic analysis of Metagenomic AmpliconS | 1-gen-2015 | Fosso, Bruno; Santamaria, Monica; Marzano, Marinella; Alonso Alemany, Daniel; Valiente, Gabriel; Donvito, Giacinto; Monaco, Alfonso; Notarangelo, Pasquale; Pesole, Graziano | |
| BioMaS: a modular pipeline for Bioinformatic analysis of Metagenomic ampliconS. | 1-gen-2013 | Fosso, B; Santamaria, M; Marzano, M; Liuni, S; Alonso Alemany, D; Valiente, G; Pesole, Graziano | |
| BioMaS: a modular pipeline for Bioinformatic analysis of Metagenomic Amplicons. | 1-gen-2012 | Fosso, B; Santamaria, M; Marzano, M; Liuni, S; Valiente, G; Pesole, Graziano | |
| BioVeL: A virtual laboratory for data analysis and modelling in biodiversity science and ecology | 1-gen-2016 | Hardisty, Alex R; Bacall, Finn; Beard, Niall; Balcázar Vargas, Maria Paula; Balech, Bachir; Barcza, Zoltán; Bourlat, Sarah J.; Giovanni, Renato; Jong, Yde; Leo, Francesca; Dobor, Laura; Donvito, Giacinto; Fellows, Donal; Guerra, Antonio Fernandez; Ferreira, Nuno; Fetyukova, Yuliya; Fosso, Bruno; Giddy, Jonathan; Goble, Carole; Güntsch, Anton; Haines, Robert; Ernst, Vera Hernández; Hettling, Hannes; Hidy, Dóra; Horváth, Ferenc; Ittzés, Dóra; Ittzés, Péter; Jones, Andrew; Kottmann, Renzo; Kulawik, Robert; Leidenberger, Sonja; Lyytikäinen Saarenmaa, Päivi; Mathew, Cherian; Morrison, Norman; Nenadic, Aleksandra; Hidalga, Abraham Nieva; Obst, Matthias; Oostermeijer, Gerard; Paymal, Elisabeth; Pesole, Graziano; Pinto, Salvatore; Poigné, Axel; Fernandez, Francisco Quevedo; Santamaria, Monica; Saarenmaa, Hannu; Sipos, Gergely; Sylla, Karl Heinz; Tähtinen, Marko; Vicario, Saverio; Vos, Rutger Aldo; Williams, Alan R.; Yilmaz, Pelin | |
| Capitolo 21 - Le analisi di sequenziamento per lo studio del microbiota. | 1-gen-2023 | Defazio, Giuseppe; Fosso, Bruno; Piancone, Elisabetta; Pesole, Graziano | |
| CHARACTERIZATION OF SURFACE LAYER MICROBIAL COMMUNITIES OF ANOPHELES GAMBIAE COMPLEX LARVAL HABITATS IN BURKINA FASO | 1-gen-2017 | Pombi, Marco; Totino, Valentina; Fosso, Bruno; Santamaria, Monica; Guerrieri, Francesca; Bassole, Imael; Guelbeogo, Wamdaogo M.; Sagnon, N'Fale; Iebba, Valerio; Pesole, Graziano; della Torre, Alessandra; Schippa, Serena; Costantini, Carlo | |
| Chicken caecal enterotypes in indigenous Kadaknath and commercial Cobb chicken lines are associated with Campylobacter abundance and influenced by farming practices | 1-gen-2023 | Hay, Melanie C.; Hinsu, Ankit T.; Koringa, Prakash G.; Pandit, Ramesh J.; Liu, Po-Yu; Parekh, Mithil J.; Jakhesara, Subhash J.; Dai, Xiaoxai; Crotta, Matteo; Fosso, Bruno; Limon, Georgina; Guitian, Javier; Tomley, Fiona M.; Xia, Dong; Psifidi, Androniki; Joshi, Chaitanya G.; Blake, Damer P. | |
| Comparative Fecal Microbiota Analysis of Infants With Acute Bronchiolitis Caused or Not Caused by Respiratory Syncytial Virus | 1-gen-2022 | De Maio, F.; Buonsenso, D.; Bianco, D. M.; Giaimo, M.; Fosso, B.; Monzo, F. R.; Sali, M.; Posteraro, B.; Valentini, P.; Sanguinetti, M. |